IL_8I9Y_065

3D structure

PDB id

8I9Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - Ytm1-2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GG*UUC

Length

5 nucleotides

Bulged bases

8I9Y|1|C1|U|1798

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8I9Y_065 not in the Motif Atlas

Geometric match to IL_2R8S_004

Geometric discrepancy: 0.2388

The information below is about IL_2R8S_004

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

147

Unit IDs

8I9Y|1|C1|G|1603
8I9Y|1|C1|G|1604
*
8I9Y|1|C1|U|1797
8I9Y|1|C1|U|1798
8I9Y|1|C1|C|1799

Current chains

Chain C1

RNA (3341-MER)

Nearby chains

Chain CC

Ribosome biogenesis protein ERB1

Chain CJ

Pescadillo homolog

Chain CM

60S ribosomal protein l7-like protein

Chain Lg

Ribosomal protein l34-like protein