IL_8I9Y_066

3D structure

PDB id

8I9Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - Ytm1-2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UUUGC*GGAAUA

Length

11 nucleotides

Bulged bases

8I9Y|1|C1|U|1608, 8I9Y|1|C1|U|1794

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8I9Y|1|C1|U|1606
8I9Y|1|C1|U|1607
8I9Y|1|C1|U|1608
8I9Y|1|C1|G|1609
8I9Y|1|C1|C|1610
*
8I9Y|1|C1|G|1790
8I9Y|1|C1|G|1791
8I9Y|1|C1|A|1792
8I9Y|1|C1|A|1793
8I9Y|1|C1|U|1794
8I9Y|1|C1|A|1795

Current chains

Chain C1

RNA (3341-MER)

Nearby chains

Chain CC

Ribosome biogenesis protein ERB1

Chain CJ

Pescadillo homolog

Chain CM

60S ribosomal protein l7-like protein

Chain LZ

60S ribosomal protein L27