IL_8I9Y_068

3D structure

PDB id

8I9Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - Ytm1-2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGC*GAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8I9Y_068 not in the Motif Atlas

Homologous match to IL_8C3A_074

Geometric discrepancy: 0.1423

The information below is about IL_8C3A_074

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

8I9Y|1|C1|G|1640
8I9Y|1|C1|G|1641
8I9Y|1|C1|C|1642
*
8I9Y|1|C1|G|1765
8I9Y|1|C1|A|1766
8I9Y|1|C1|C|1767

Current chains

Chain C1

RNA (3341-MER)

Nearby chains

Chain CY

Putative NOC2 family protein

Chain LR

Ribosomal protein L19

Chain Lg

Ribosomal protein l34-like protein