IL_8I9Y_089

3D structure

PDB id

8I9Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - Ytm1-2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CG*CAG

Length

5 nucleotides

Bulged bases

8I9Y|1|C1|A|2929

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8I9Y_089 not in the Motif Atlas

Geometric match to IL_2QUX_002

Geometric discrepancy: 0.171

The information below is about IL_2QUX_002

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

160

Unit IDs

8I9Y|1|C1|C|2918
8I9Y|1|C1|G|2919
*
8I9Y|1|C1|C|2928
8I9Y|1|C1|A|2929
8I9Y|1|C1|G|2930

Current chains

Chain C1

RNA (3341-MER)

Nearby chains

Chain CG

60S ribosome subunit biogenesis protein NIP7

Chain CK

Ribosome biogenesis protein NSA2 homolog

Chain CS

AdoMet-dependent rRNA methyltransferase SPB1