IL_8I9Y_104

3D structure

PDB id

8I9Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - Ytm1-2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

8I9Y|1|C1|U|3259

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8I9Y_104 not in the Motif Atlas

Homologous match to IL_8C3A_136

Geometric discrepancy: 0.2085

The information below is about IL_8C3A_136

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

8I9Y|1|C1|G|3258
8I9Y|1|C1|U|3259
8I9Y|1|C1|G|3260
*
8I9Y|1|C1|C|3328
8I9Y|1|C1|C|3329

Current chains

Chain C1

RNA (3341-MER)

Nearby chains

Chain LB

60S ribosomal protein L3-like protein

Chain Ld

Putative 60S ribosomal protein