IL_8I9Y_115

3D structure

PDB id

8I9Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - Ytm1-2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GG*UGC

Length

5 nucleotides

Bulged bases

8I9Y|1|C2|G|291

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8I9Y_115 not in the Motif Atlas

Geometric match to IL_8ZA0_002

Geometric discrepancy: 0.364

The information below is about IL_8ZA0_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28408.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

69

Unit IDs

8I9Y|1|C2|G|226
8I9Y|1|C2|G|227
*
8I9Y|1|C2|U|290
8I9Y|1|C2|G|291
8I9Y|1|C2|C|292

Current chains

Chain C2

RNA (319-MER)

Nearby chains

Chain CI

Putative RNA-binding protein