IL_8I9Z_008

3D structure

PDB id

8I9Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Spb4

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

AG*CUU

Length

5 nucleotides

Bulged bases

8I9Z|1|C1|U|253

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8I9Z_008 not in the Motif Atlas

Geometric match to IL_6MWN_006

Geometric discrepancy: 0.2651

The information below is about IL_6MWN_006

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

147

Unit IDs

8I9Z|1|C1|A|154
8I9Z|1|C1|G|155
*
8I9Z|1|C1|C|252
8I9Z|1|C1|U|253
8I9Z|1|C1|U|254

Current chains

Chain C1

RNA (3341-MER)

Nearby chains

Chain CC

Ribosome biogenesis protein ERB1

Chain CE

RNA helicase

Chain CR

Nucleolar protein 16