IL_8I9Z_021
3D structure
- PDB id
- 8I9Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Spb4
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- GGAUAAAGG*UGUAAUAC
- Length
- 17 nucleotides
- Bulged bases
- 8I9Z|1|C1|A|509, 8I9Z|1|C1|U|510, 8I9Z|1|C1|U|559
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8I9Z_021 not in the Motif Atlas
- Homologous match to IL_5TBW_019
- Geometric discrepancy: 0.356
- The information below is about IL_5TBW_019
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_74024.1
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-L-R-cWW
- Number of instances in this motif group
- 2
Unit IDs
8I9Z|1|C1|G|507
8I9Z|1|C1|G|508
8I9Z|1|C1|A|509
8I9Z|1|C1|U|510
8I9Z|1|C1|A|511
8I9Z|1|C1|A|512
8I9Z|1|C1|A|513
8I9Z|1|C1|G|514
8I9Z|1|C1|G|515
*
8I9Z|1|C1|U|557
8I9Z|1|C1|G|558
8I9Z|1|C1|U|559
8I9Z|1|C1|A|560
8I9Z|1|C1|A|561
8I9Z|1|C1|U|562
8I9Z|1|C1|A|563
8I9Z|1|C1|C|564
Current chains
- Chain C1
- RNA (3341-MER)
Nearby chains
- Chain LC
- 60S ribosomal protein L4-like protein
- Chain LF
- 60S ribosomal protein l7-like protein
- Chain LM
- 60S ribosomal protein L14-like protein
- Chain LS
- 60S ribosomal protein L20
Coloring options: