IL_8I9Z_032

3D structure

PDB id

8I9Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Spb4

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UUG*UGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8I9Z_032 not in the Motif Atlas

Geometric match to IL_1RPU_001

Geometric discrepancy: 0.1439

The information below is about IL_1RPU_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

8I9Z|1|C1|U|805
8I9Z|1|C1|U|806
8I9Z|1|C1|G|807
*
8I9Z|1|C1|U|880
8I9Z|1|C1|G|881
8I9Z|1|C1|A|882

Current chains

Chain C1

RNA (3341-MER)

Nearby chains

Chain CT

Nucleolar complex-associated protein 3

Chain CY

Putative NOC2 family protein

Chain Lg

Ribosomal protein l34-like protein