IL_8I9Z_035

3D structure

PDB id

8I9Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Spb4

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GGC*GAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8I9Z_035 not in the Motif Atlas

Geometric match to IL_4V88_467

Geometric discrepancy: 0.1309

The information below is about IL_4V88_467

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

8I9Z|1|C1|G|890
8I9Z|1|C1|G|891
8I9Z|1|C1|C|892
*
8I9Z|1|C1|G|897
8I9Z|1|C1|A|898
8I9Z|1|C1|C|899

Current chains

Chain C1

RNA (3341-MER)

Nearby chains

Chain CS

AdoMet-dependent rRNA methyltransferase SPB1