IL_8I9Z_073

3D structure

PDB id

8I9Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Spb4

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CUAUCA*UUUAAUG

Length

13 nucleotides

Bulged bases

8I9Z|1|C1|U|1721

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8I9Z|1|C1|C|1681
8I9Z|1|C1|U|1682
8I9Z|1|C1|A|1683
8I9Z|1|C1|U|1684
8I9Z|1|C1|C|1685
8I9Z|1|C1|A|1686
*
8I9Z|1|C1|U|1716
8I9Z|1|C1|U|1717
8I9Z|1|C1|U|1718
8I9Z|1|C1|A|1719
8I9Z|1|C1|A|1720
8I9Z|1|C1|U|1721
8I9Z|1|C1|G|1722

Current chains

Chain C1

RNA (3341-MER)

Nearby chains

Chain CC

Ribosome biogenesis protein ERB1

Chain Lg

Ribosomal protein l34-like protein