IL_8I9Z_076
3D structure
- PDB id
- 8I9Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Spb4
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- AAG*CCU
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8I9Z_076 not in the Motif Atlas
- Homologous match to IL_8C3A_081
- Geometric discrepancy: 0.1798
- The information below is about IL_8C3A_081
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_54997.8
- Basepair signature
- cWW-tWW-cWW
- Number of instances in this motif group
- 8
Unit IDs
8I9Z|1|C1|A|1874
8I9Z|1|C1|A|1875
8I9Z|1|C1|G|1876
*
8I9Z|1|C1|C|2300
8I9Z|1|C1|C|2301
8I9Z|1|C1|U|2302
Current chains
- Chain C1
- RNA (3341-MER)
Nearby chains
- Chain CQ
- Ribosome biogenesis protein RLP24
- Chain CS
- AdoMet-dependent rRNA methyltransferase SPB1
- Chain LB
- 60S ribosomal protein L3-like protein
- Chain LV
- 60S ribosomal protein l23-like protein
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