IL_8I9Z_079

3D structure

PDB id

8I9Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Spb4

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

AAC*GGU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8I9Z_079 not in the Motif Atlas

Geometric match to IL_5UNE_001

Geometric discrepancy: 0.1843

The information below is about IL_5UNE_001

Detailed Annotation

Isolated non-canonical cWW contact

Broad Annotation

No text annotation

Motif group

IL_87720.1

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

8

Unit IDs

8I9Z|1|C1|A|1900
8I9Z|1|C1|A|1901
8I9Z|1|C1|C|1902
*
8I9Z|1|C1|G|2072
8I9Z|1|C1|G|2073
8I9Z|1|C1|U|2074

Current chains

Chain C1

RNA (3341-MER)

Nearby chains

Chain CW

ATP-dependent RNA helicase