IL_8I9Z_081

3D structure

PDB id

8I9Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Spb4

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GGG*CGGUUAAC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8I9Z|1|C1|G|1931
8I9Z|1|C1|G|1932
8I9Z|1|C1|G|1933
*
8I9Z|1|C1|C|2049
8I9Z|1|C1|G|2050
8I9Z|1|C1|G|2051
8I9Z|1|C1|U|2052
8I9Z|1|C1|U|2053
8I9Z|1|C1|A|2054
8I9Z|1|C1|A|2055
8I9Z|1|C1|C|2056

Current chains

Chain C1

RNA (3341-MER)

Nearby chains

Chain CD

Ribosome biogenesis protein YTM1

Chain CW

ATP-dependent RNA helicase