IL_8I9Z_091
3D structure
- PDB id
- 8I9Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Spb4
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- UUG*CCA
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8I9Z_091 not in the Motif Atlas
- Geometric match to IL_4ZC7_004
- Geometric discrepancy: 0.1069
- The information below is about IL_4ZC7_004
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- Isolated non-canonical cWW pair
- Motif group
- IL_01003.3
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 214
Unit IDs
8I9Z|1|C1|U|2372
8I9Z|1|C1|U|2373
8I9Z|1|C1|G|2374
*
8I9Z|1|C1|C|2767
8I9Z|1|C1|C|2768
8I9Z|1|C1|A|2769
Current chains
- Chain C1
- RNA (3341-MER)
Nearby chains
- Chain CG
- 60S ribosome subunit biogenesis protein NIP7
- Chain CK
- Ribosome biogenesis protein NSA2 homolog
- Chain CU
- rRNA-processing protein EBP2
- Chain CX
- 60S ribosomal subunit-like protein
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