IL_8I9Z_093

3D structure

PDB id

8I9Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Spb4

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UAG*UGGG

Length

7 nucleotides

Bulged bases

8I9Z|1|C1|G|2564

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8I9Z_093 not in the Motif Atlas

Homologous match to IL_5TBW_095

Geometric discrepancy: 0.1729

The information below is about IL_5TBW_095

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_38958.10

Basepair signature

cWW-cWW-cWW-tHS

Number of instances in this motif group

9

Unit IDs

8I9Z|1|C1|U|2385
8I9Z|1|C1|A|2386
8I9Z|1|C1|G|2387
*
8I9Z|1|C1|U|2562
8I9Z|1|C1|G|2563
8I9Z|1|C1|G|2564
8I9Z|1|C1|G|2565

Current chains

Chain C1

RNA (3341-MER)

Nearby chains

Chain CG

60S ribosome subunit biogenesis protein NIP7

Chain CP

RNA methyltransferase nop2-like protein

Chain CX

60S ribosomal subunit-like protein