IL_8I9Z_111

3D structure

PDB id

8I9Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Spb4

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GUU*AC

Length

5 nucleotides

Bulged bases

8I9Z|1|C1|U|3121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8I9Z_111 not in the Motif Atlas

Geometric match to IL_5TBW_025

Geometric discrepancy: 0.3393

The information below is about IL_5TBW_025

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

8I9Z|1|C1|G|3120
8I9Z|1|C1|U|3121
8I9Z|1|C1|U|3122
*
8I9Z|1|C1|A|3222
8I9Z|1|C1|C|3223

Current chains

Chain C1

RNA (3341-MER)

Nearby chains

Chain CO

DUF2423 domain-containing protein

Chain CV

Putative 60S ribosomal protein

Chain Lf

60S ribosomal protein l33-like protein