IL_8I9Z_121

3D structure

PDB id

8I9Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Spb4

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GUA*UC

Length

5 nucleotides

Bulged bases

8I9Z|1|C1|U|3281

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8I9Z_121 not in the Motif Atlas

Geometric match to IL_5LYS_008

Geometric discrepancy: 0.259

The information below is about IL_5LYS_008

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

147

Unit IDs

8I9Z|1|C1|G|3280
8I9Z|1|C1|U|3281
8I9Z|1|C1|A|3282
*
8I9Z|1|C1|U|3303
8I9Z|1|C1|C|3304

Current chains

Chain C1

RNA (3341-MER)

Nearby chains

Chain CQ

Ribosome biogenesis protein RLP24

Chain CW

ATP-dependent RNA helicase