IL_8I9Z_132
3D structure
- PDB id
- 8I9Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Spb4
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- GGAAGUCGG*CUGUC
- Length
- 14 nucleotides
- Bulged bases
- 8I9Z|1|C1|G|2297
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8I9Z_132 not in the Motif Atlas
- Homologous match to IL_8P9A_305
- Geometric discrepancy: 0.2593
- The information below is about IL_8P9A_305
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_80252.1
- Basepair signature
- cWW-tSH-cWW-tHW-R-L-cWW-L-L-R
- Number of instances in this motif group
- 10
Unit IDs
8I9Z|1|C1|G|1877
8I9Z|1|C1|G|1878
8I9Z|1|C1|A|1879
8I9Z|1|C1|A|1880
8I9Z|1|C1|G|1881
8I9Z|1|C1|U|1882
8I9Z|1|C1|C|1883
8I9Z|1|C1|G|1884
8I9Z|1|C1|G|1885
*
8I9Z|1|C1|C|2295
8I9Z|1|C1|U|2296
8I9Z|1|C1|G|2297
8I9Z|1|C1|U|2298
8I9Z|1|C1|C|2299
Current chains
- Chain C1
- RNA (3341-MER)
Nearby chains
- Chain CS
- AdoMet-dependent rRNA methyltransferase SPB1
- Chain LB
- 60S ribosomal protein L3-like protein
- Chain LV
- 60S ribosomal protein l23-like protein
Coloring options: