IL_8IA0_087

3D structure

PDB id

8IA0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Puf6

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UAG*CCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IA0_087 not in the Motif Atlas

Geometric match to IL_5TBW_016

Geometric discrepancy: 0.1654

The information below is about IL_5TBW_016

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

8IA0|1|C1|U|1976
8IA0|1|C1|A|1977
8IA0|1|C1|G|1978
*
8IA0|1|C1|C|1991
8IA0|1|C1|C|1992
8IA0|1|C1|G|1993

Current chains

Chain C1

RNA (3341-MER)

Nearby chains