IL_8IA0_093

3D structure

PDB id

8IA0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Puf6

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CAG*CG

Length

5 nucleotides

Bulged bases

8IA0|1|C1|A|2160

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IA0_093 not in the Motif Atlas

Geometric match to IL_7RQB_101

Geometric discrepancy: 0.3223

The information below is about IL_7RQB_101

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_37497.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

118

Unit IDs

8IA0|1|C1|C|2159
8IA0|1|C1|A|2160
8IA0|1|C1|G|2161
*
8IA0|1|C1|C|2199
8IA0|1|C1|G|2200

Current chains

Chain C1

RNA (3341-MER)

Nearby chains

Chain CZ

PUM-HD domain-containing protein