IL_8IA0_107
3D structure
- PDB id
- 8IA0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Puf6
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- UCU*AAA
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Missing nucleotides
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8IA0_107 not in the Motif Atlas
- Geometric match to IL_8GXB_001
- Geometric discrepancy: 0.3899
- The information below is about IL_8GXB_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_16386.5
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 5
Unit IDs
8IA0|1|C1|U|2838
8IA0|1|C1|C|2839
8IA0|1|C1|U|2840
*
8IA0|1|C1|A|2898
8IA0|1|C1|A|2899
8IA0|1|C1|A|2904
Current chains
- Chain C1
- RNA (3341-MER)
Nearby chains
- Chain CH
- Nucleolar GTP-binding protein 1
- Chain LB
- 60S ribosomal protein L3-like protein
- Chain LO
- 60S ribosomal protein L16-like protein
- Chain LV
- 60S ribosomal protein l23-like protein
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