IL_8IAZ_003

3D structure

PDB id

8IAZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ISFba1 TnpB-reRNA-dsDNA complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

ACAU*AU

Length

6 nucleotides

Bulged bases

8IAZ|1|E|C|64, 8IAZ|1|E|A|65

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IAZ_003 not in the Motif Atlas

Geometric match to IL_3MXH_004

Geometric discrepancy: 0.1663

The information below is about IL_3MXH_004

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_71421.5

Basepair signature

cWW-cWW

Number of instances in this motif group

36

Unit IDs

8IAZ|1|E|A|63
8IAZ|1|E|C|64
8IAZ|1|E|A|65
8IAZ|1|E|U|72
*
8IAZ|1|E|A|105
8IAZ|1|E|U|106

Current chains

Chain E

RNA (207-MER)

Nearby chains

Chain A

Transposase