IL_8IAZ_004

3D structure

PDB id

8IAZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ISFba1 TnpB-reRNA-dsDNA complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UGU*GCA

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IAZ_004 not in the Motif Atlas

Geometric match to IL_4V9F_023

Geometric discrepancy: 0.166

The information below is about IL_4V9F_023

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.6

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

241

Unit IDs

8IAZ|1|E|U|72
8IAZ|1|E|G|73
8IAZ|1|E|U|74
*
8IAZ|1|E|G|103
8IAZ|1|E|C|104
8IAZ|1|E|A|105

Current chains

Chain E

RNA (207-MER)

Nearby chains

Chain A

Transposase