IL_8IAZ_005

3D structure

PDB id

8IAZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ISFba1 TnpB-reRNA-dsDNA complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UGAGUAG*CCAAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IAZ_005 not in the Motif Atlas

Geometric match to IL_7RQB_007

Geometric discrepancy: 0.1708

The information below is about IL_7RQB_007

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_76042.2

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

8IAZ|1|E|U|74
8IAZ|1|E|G|75
8IAZ|1|E|A|76
8IAZ|1|E|G|77
8IAZ|1|E|U|78
8IAZ|1|E|A|79
8IAZ|1|E|G|80
*
8IAZ|1|E|C|98
8IAZ|1|E|C|99
8IAZ|1|E|A|100
8IAZ|1|E|A|101
8IAZ|1|E|A|102
8IAZ|1|E|G|103

Current chains

Chain E

RNA (207-MER)

Nearby chains

Chain A

Transposase