IL_8IAZ_008

3D structure

PDB id

8IAZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ISFba1 TnpB-reRNA-dsDNA complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CG*UUUG

Length

6 nucleotides

Bulged bases

8IAZ|1|E|U|178

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IAZ_008 not in the Motif Atlas

Geometric match to IL_4V9F_067

Geometric discrepancy: 0.0867

The information below is about IL_4V9F_067

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_71421.5

Basepair signature

cWW-cWW

Number of instances in this motif group

36

Unit IDs

8IAZ|1|E|C|152
8IAZ|1|E|G|153
*
8IAZ|1|E|U|176
8IAZ|1|E|U|177
8IAZ|1|E|U|178
8IAZ|1|E|G|179

Current chains

Chain E

RNA (207-MER)

Nearby chains

Chain A

Transposase