IL_8IDT_039

3D structure

PDB id

8IDT (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State G

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GCU*AGU

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IDT_039 not in the Motif Atlas

Geometric match to IL_5UNE_001

Geometric discrepancy: 0.19

The information below is about IL_5UNE_001

Detailed Annotation

Isolated non-canonical cWW contact

Broad Annotation

No text annotation

Motif group

IL_87720.1

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

8

Unit IDs

8IDT|1|2|G|752
8IDT|1|2|C|753
8IDT|1|2|U|754
*
8IDT|1|2|A|909
8IDT|1|2|G|910
8IDT|1|2|U|911

Current chains

Chain 2

28S rRNA

Nearby chains

Chain R

Translation machinery-associated protein 16

Chain b

60S ribosomal protein L18a