IL_8IDT_047

3D structure

PDB id

8IDT (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State G

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CGC*GCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: CGC,GCG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IDT_047 not in the Motif Atlas

Geometric match to IL_4KQ0_002

Geometric discrepancy: 0.1503

The information below is about IL_4KQ0_002

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10892.2

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

58

Unit IDs

8IDT|1|2|C|1097
8IDT|1|2|G|1098
8IDT|1|2|C|1099
*
8IDT|1|2|G|1196
8IDT|1|2|C|1197
8IDT|1|2|G|1198

Current chains

Chain 2

28S rRNA

Nearby chains

Chain R

Translation machinery-associated protein 16

Chain b

60S ribosomal protein L18a

Chain c

60S ribosomal protein L21