IL_8IDT_064

3D structure

PDB id

8IDT (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State G

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GGUCC*G(7MG)UC

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 7MG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IDT_064 not in the Motif Atlas

Geometric match to IL_8CRE_467

Geometric discrepancy: 0.3706

The information below is about IL_8CRE_467

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_25873.2

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

8IDT|1|2|G|1586
8IDT|1|2|G|1587
8IDT|1|2|U|1588
8IDT|1|2|C|1589
8IDT|1|2|C|1590
*
8IDT|1|2|G|1604
8IDT|1|2|7MG|1605
8IDT|1|2|U|1606
8IDT|1|2|C|1607

Current chains

Chain 2

28S rRNA

Nearby chains

Chain 9

Zinc finger protein 593

Chain B

60S ribosomal protein L3

Chain M

60S ribosomal protein L37