IL_8IDT_084

3D structure

PDB id

8IDT (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State G

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GUGGC*GAAUC

Length

10 nucleotides

Bulged bases

8IDT|1|2|G|1975

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IDT_084 not in the Motif Atlas

Homologous match to IL_8C3A_058

Geometric discrepancy: 0.4833

The information below is about IL_8C3A_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_30542.5

Basepair signature

cWW-L-R-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

8IDT|1|2|G|1973
8IDT|1|2|U|1974
8IDT|1|2|G|1975
8IDT|1|2|G|1976
8IDT|1|2|C|1977
*
8IDT|1|2|G|1989
8IDT|1|2|A|1990
8IDT|1|2|A|1991
8IDT|1|2|U|1992
8IDT|1|2|C|1993

Current chains

Chain 2

28S rRNA

Nearby chains

Chain J

mRNA turnover protein 4 homolog

Chain y

60S ribosomal protein L12