IL_8IDT_132

3D structure

PDB id

8IDT (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State G

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GGGGGCGAGCCCCGAGGGGCUCUCGCUUCUGGCGCCAA(B8W)C*GCGAC

Length

45 nucleotides

Bulged bases

8IDT|1|2|G|4115, 8IDT|1|2|C|4116, 8IDT|1|2|U|4117, 8IDT|1|2|U|4118, 8IDT|1|2|G|4121

QA status

Modified nucleotides: B8W

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8IDT|1|2|G|4091
8IDT|1|2|G|4092
8IDT|1|2|G|4093
8IDT|1|2|G|4094
8IDT|1|2|G|4095
8IDT|1|2|C|4096
8IDT|1|2|G|4097
8IDT|1|2|A|4098
8IDT|1|2|G|4099
8IDT|1|2|C|4100
8IDT|1|2|C|4101
8IDT|1|2|C|4102
8IDT|1|2|C|4103
8IDT|1|2|G|4104
8IDT|1|2|A|4105
8IDT|1|2|G|4106
8IDT|1|2|G|4107
8IDT|1|2|G|4108
8IDT|1|2|G|4109
8IDT|1|2|C|4110
8IDT|1|2|U|4111
8IDT|1|2|C|4112
8IDT|1|2|U|4113
8IDT|1|2|C|4114
8IDT|1|2|G|4115
8IDT|1|2|C|4116
8IDT|1|2|U|4117
8IDT|1|2|U|4118
8IDT|1|2|C|4119
8IDT|1|2|U|4120
8IDT|1|2|G|4121
8IDT|1|2|G|4122
8IDT|1|2|C|4123
8IDT|1|2|G|4124
8IDT|1|2|C|4125
8IDT|1|2|C|4126
8IDT|1|2|A|4127
8IDT|1|2|A|4128
8IDT|1|2|B8W|4129
8IDT|1|2|C|4130
*
8IDT|1|2|G|4154
8IDT|1|2|C|4155
8IDT|1|2|G|4156
8IDT|1|2|A|4157
8IDT|1|2|C|4158

Current chains

Chain 2

28S rRNA

Nearby chains

Chain E

60S ribosomal protein L30

Chain F

60S ribosomal protein L34

Chain G

60S ribosomal protein L7a

Chain X

60S ribosomal protein L37a

Chain g

60S ribosomal protein L23a

Chain i

60S ribosomal protein L27

Chain m

60S ribosomal protein L8