IL_8IDT_142

3D structure

PDB id

8IDT (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State G

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UUG*CCAAG

Length

8 nucleotides

Bulged bases

8IDT|1|2|A|4488

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IDT_142 not in the Motif Atlas

Geometric match to IL_8GLP_150

Geometric discrepancy: 0.1631

The information below is about IL_8GLP_150

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_09353.2

Basepair signature

cWW-cWW-L-cWW

Number of instances in this motif group

3

Unit IDs

8IDT|1|2|U|4468
8IDT|1|2|U|4469
8IDT|1|2|G|4470
*
8IDT|1|2|C|4485
8IDT|1|2|C|4486
8IDT|1|2|A|4487
8IDT|1|2|A|4488
8IDT|1|2|G|4489

Current chains

Chain 2

28S rRNA

Nearby chains

Chain 4

GTP-binding protein 4

Chain I

60S ribosomal protein L9

Chain T

Leydig cell tumor 10 kDa protein homolog

Chain z

Protein LLP homolog