IL_8IDT_144

3D structure

PDB id

8IDT (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State G

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CG*CAG

Length

5 nucleotides

Bulged bases

8IDT|1|2|A|4548

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IDT_144 not in the Motif Atlas

Homologous match to IL_8C3A_122

Geometric discrepancy: 0.345

The information below is about IL_8C3A_122

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

8IDT|1|2|C|4537
8IDT|1|2|G|4538
*
8IDT|1|2|C|4547
8IDT|1|2|A|4548
8IDT|1|2|G|4549

Current chains

Chain 2

28S rRNA

Nearby chains

Chain A

G Protein Nucleolar 2

Chain m

60S ribosomal protein L8