IL_8IDT_157

3D structure

PDB id

8IDT (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State G

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CCUCGGAUAG*U(OMG)C(2MG)GAGUG

Length

19 nucleotides

Bulged bases

8IDT|1|2|C|4757, 8IDT|1|2|U|4758, 8IDT|1|2|A|4764, 8IDT|1|2|G|4873, 8IDT|1|2|A|4874, 8IDT|1|2|U|4876

QA status

Modified nucleotides: OMG, 2MG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8IDT|1|2|C|4756
8IDT|1|2|C|4757
8IDT|1|2|U|4758
8IDT|1|2|C|4759
8IDT|1|2|G|4760
8IDT|1|2|G|4761
8IDT|1|2|A|4762
8IDT|1|2|U|4763
8IDT|1|2|A|4764
8IDT|1|2|G|4765
*
8IDT|1|2|U|4869
8IDT|1|2|OMG|4870
8IDT|1|2|C|4871
8IDT|1|2|2MG|4872
8IDT|1|2|G|4873
8IDT|1|2|A|4874
8IDT|1|2|G|4875
8IDT|1|2|U|4876
8IDT|1|2|G|4877

Current chains

Chain 2

28S rRNA

Nearby chains

Chain I

60S ribosomal protein L9

Chain S

60S ribosomal protein L14

Chain V

60S ribosomal protein L13a

Chain b

60S ribosomal protein L18a

Chain o

60S ribosomal protein L6