IL_8IDT_177

3D structure

PDB id

8IDT (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State G

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CCGCUCGUGG*CGGCG

Length

15 nucleotides

Bulged bases

8IDT|1|2|C|185, 8IDT|1|2|G|186, 8IDT|1|2|U|187, 8IDT|1|2|G|188

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8IDT|1|2|C|180
8IDT|1|2|C|181
8IDT|1|2|G|182
8IDT|1|2|C|183
8IDT|1|2|U|184
8IDT|1|2|C|185
8IDT|1|2|G|186
8IDT|1|2|U|187
8IDT|1|2|G|188
8IDT|1|2|G|189
*
8IDT|1|2|C|252
8IDT|1|2|G|253
8IDT|1|2|G|254
8IDT|1|2|C|255
8IDT|1|2|G|256

Current chains

Chain 2

28S rRNA

Nearby chains

Chain 8

5.8S ribosomal RNA; 5.8S rRNA

Chain H

60S ribosomal protein L35

Chain M

60S ribosomal protein L37

Chain Q

60S ribosomal protein L13