IL_8IDT_179

3D structure

PDB id

8IDT (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State G

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UUUC*GG

Length

6 nucleotides

Bulged bases

8IDT|1|2|U|513, 8IDT|1|2|U|514

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IDT_179 not in the Motif Atlas

Geometric match to IL_8C3A_483

Geometric discrepancy: 0.2023

The information below is about IL_8C3A_483

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_25360.1

Basepair signature

cWW-cWW

Number of instances in this motif group

10

Unit IDs

8IDT|1|2|U|512
8IDT|1|2|U|513
8IDT|1|2|U|514
8IDT|1|2|C|515
*
8IDT|1|2|G|646
8IDT|1|2|G|647

Current chains

Chain 2

28S rRNA

Nearby chains

Chain Q

60S ribosomal protein L13