IL_8IDY_010

3D structure

PDB id

8IDY (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State F

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CCGGCG*CGCCGG

Length

12 nucleotides

Bulged bases

None detected

QA status

Self-complementary: CCGGCG,CGCCGG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IDY_010 not in the Motif Atlas

Geometric match to IL_6O5F_001

Geometric discrepancy: 0.3485

The information below is about IL_6O5F_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31007.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-cWW

Number of instances in this motif group

5

Unit IDs

8IDY|1|2|C|174
8IDY|1|2|C|175
8IDY|1|2|G|176
8IDY|1|2|G|177
8IDY|1|2|C|178
8IDY|1|2|G|179
*
8IDY|1|2|C|257
8IDY|1|2|G|258
8IDY|1|2|C|259
8IDY|1|2|C|260
8IDY|1|2|G|261
8IDY|1|2|G|262

Current chains

Chain 2

28S rRNA

Nearby chains

Chain H

60S ribosomal protein L35

Chain Q

60S ribosomal protein L13