IL_8IDY_023

3D structure

PDB id

8IDY (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State F

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGUC*GC

Length

6 nucleotides

Bulged bases

8IDY|1|2|G|483, 8IDY|1|2|U|484

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IDY_023 not in the Motif Atlas

Geometric match to IL_6JXM_001

Geometric discrepancy: 0.2317

The information below is about IL_6JXM_001

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_05670.1

Basepair signature

cWW-cWW

Number of instances in this motif group

9

Unit IDs

8IDY|1|2|G|482
8IDY|1|2|G|483
8IDY|1|2|U|484
8IDY|1|2|C|485
*
8IDY|1|2|G|671
8IDY|1|2|C|672

Current chains

Chain 2

28S rRNA

Nearby chains