IL_8IDY_115

3D structure

PDB id

8IDY (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State F

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

C(OMC)AG*CG

Length

6 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IDY_115 not in the Motif Atlas

Homologous match to IL_5TBW_084

Geometric discrepancy: 0.2282

The information below is about IL_5TBW_084

Detailed Annotation

Major groove intercalation

Broad Annotation

No text annotation

Motif group

IL_88739.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

8IDY|1|2|C|3700
8IDY|1|2|OMC|3701
8IDY|1|2|A|3702
8IDY|1|2|G|3703
*
8IDY|1|2|C|3749
8IDY|1|2|G|3750

Current chains

Chain 2

28S rRNA

Nearby chains

Chain A

G Protein Nucleolar 2

Chain m

60S ribosomal protein L8

Chain u

Protein SDA1 homolog