IL_8IDY_134

3D structure

PDB id

8IDY (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State F

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CCA(1MA)G*CGACG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IDY_134 not in the Motif Atlas

Homologous match to IL_8C3A_114

Geometric discrepancy: 0.3474

The information below is about IL_8C3A_114

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65585.1

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

8IDY|1|2|C|4412
8IDY|1|2|C|4413
8IDY|1|2|A|4414
8IDY|1|2|1MA|4415
8IDY|1|2|G|4416
*
8IDY|1|2|C|4426
8IDY|1|2|G|4427
8IDY|1|2|A|4428
8IDY|1|2|C|4429
8IDY|1|2|G|4430

Current chains

Chain 2

28S rRNA

Nearby chains

Chain T

Leydig cell tumor 10 kDa protein homolog