Loop IL_8IDY

3D structure

PDB id: 8IDY (explore in PDB, NAKB, or RNA 3D Hub)
Description: human nuclear pre-60S ribosomal particle - State F
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å

Loop

Sequence: GGGGGCGAGCCCCGAGGGGCUCUCGCUUCUGGCGCCAA(B8W)*CGAC
Length: 43 nucleotides
Bulged bases: 8IDY|1|2|C|4103, 8IDY|1|2|G|4104, 8IDY|1|2|A|4105, 8IDY|1|2|G|4106, 8IDY|1|2|C|4114, 8IDY|1|2|G|4115, 8IDY|1|2|C|4116, 8IDY|1|2|U|4117, 8IDY|1|2|U|4118, 8IDY|1|2|G|4121
QA status: Modified nucleotides: B8W

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

8IDY|1|2|G|4091
8IDY|1|2|G|4092
8IDY|1|2|G|4093
8IDY|1|2|G|4094
8IDY|1|2|G|4095
8IDY|1|2|C|4096
8IDY|1|2|G|4097
8IDY|1|2|A|4098
8IDY|1|2|G|4099
8IDY|1|2|C|4100
8IDY|1|2|C|4101
8IDY|1|2|C|4102
8IDY|1|2|C|4103
8IDY|1|2|G|4104
8IDY|1|2|A|4105
8IDY|1|2|G|4106
8IDY|1|2|G|4107
8IDY|1|2|G|4108
8IDY|1|2|G|4109
8IDY|1|2|C|4110
8IDY|1|2|U|4111
8IDY|1|2|C|4112
8IDY|1|2|U|4113
8IDY|1|2|C|4114
8IDY|1|2|G|4115
8IDY|1|2|C|4116
8IDY|1|2|U|4117
8IDY|1|2|U|4118
8IDY|1|2|C|4119
8IDY|1|2|U|4120
8IDY|1|2|G|4121
8IDY|1|2|G|4122
8IDY|1|2|C|4123
8IDY|1|2|G|4124
8IDY|1|2|C|4125
8IDY|1|2|C|4126
8IDY|1|2|A|4127
8IDY|1|2|A|4128
8IDY|1|2|B8W|4129
*
8IDY|1|2|C|4155
8IDY|1|2|G|4156
8IDY|1|2|A|4157
8IDY|1|2|C|4158

Current chains

Chain 2: 28S rRNA

Nearby chains

Chain E: 60S ribosomal protein L30
Chain F: 60S ribosomal protein L34
Chain G: 60S ribosomal protein L7a
Chain X: 60S ribosomal protein L37a
Chain i: 60S ribosomal protein L27
Chain m: 60S ribosomal protein L8

IL_8IDY_185