IL_8IE3_066
3D structure
- PDB id
- 8IE3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- human nuclear pre-60S ribosomal particle - State E
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- CUCGCAGACCCGACGCCCGCCACG*CG
- Length
- 26 nucleotides
- Bulged bases
- 8IE3|1|2|A|1701, 8IE3|1|2|C|1704, 8IE3|1|2|C|1707, 8IE3|1|2|G|1708, 8IE3|1|2|C|1714, 8IE3|1|2|C|1718
- QA status
- Missing nucleotides
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8IE3_066 not in the Motif Atlas
- Homologous match to IL_8P9A_264
- Geometric discrepancy: 0.5725
- The information below is about IL_8P9A_264
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_25463.2
- Basepair signature
- cWW-L-cWW-L-L
- Number of instances in this motif group
- 3
Unit IDs
8IE3|1|2|C|1694
8IE3|1|2|U|1695
8IE3|1|2|C|1696
8IE3|1|2|G|1697
8IE3|1|2|C|1698
8IE3|1|2|A|1699
8IE3|1|2|G|1700
8IE3|1|2|A|1701
8IE3|1|2|C|1702
8IE3|1|2|C|1703
8IE3|1|2|C|1704
8IE3|1|2|G|1705
8IE3|1|2|A|1706
8IE3|1|2|C|1707
8IE3|1|2|G|1708
8IE3|1|2|C|1709
8IE3|1|2|C|1714
8IE3|1|2|C|1715
8IE3|1|2|G|1716
8IE3|1|2|C|1717
8IE3|1|2|C|1718
8IE3|1|2|A|1719
8IE3|1|2|C|1720
8IE3|1|2|G|1721
*
8IE3|1|2|C|1841
8IE3|1|2|G|1842
Current chains
- Chain 2
- 28S rRNA
Nearby chains
- Chain C
- 60S ribosomal protein L29
- Chain D
- 60S ribosomal protein L4
- Chain Z
- 60S ribosomal protein L18
- Chain c
- 60S ribosomal protein L21
- Chain p
- 60S ribosomal protein L7
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