IL_8IE3_082

3D structure

PDB id

8IE3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State E

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GAGUG*CUC

Length

8 nucleotides

Bulged bases

8IE3|1|2|A|2002

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IE3_082 not in the Motif Atlas

Geometric match to IL_5D8H_003

Geometric discrepancy: 0.208

The information below is about IL_5D8H_003

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

Major groove platform

Motif group

IL_36931.2

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

24

Unit IDs

8IE3|1|2|G|2001
8IE3|1|2|A|2002
8IE3|1|2|G|2003
8IE3|1|2|U|2004
8IE3|1|2|G|2005
*
8IE3|1|2|C|2014
8IE3|1|2|U|2015
8IE3|1|2|C|2016

Current chains

Chain 2

28S rRNA

Nearby chains

Chain J

mRNA turnover protein 4 homolog

Chain R

Ribosome biogenesis protein NSA2 homolog