IL_8IE3_132

3D structure

PDB id

8IE3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State E

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CCA(1MA)G*CGACG

Length

10 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 1MA

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IE3_132 not in the Motif Atlas

Homologous match to IL_8C3A_114

Geometric discrepancy: 0.4326

The information below is about IL_8C3A_114

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65585.1

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

8IE3|1|2|C|4412
8IE3|1|2|C|4413
8IE3|1|2|A|4414
8IE3|1|2|1MA|4415
8IE3|1|2|G|4416
*
8IE3|1|2|C|4426
8IE3|1|2|G|4427
8IE3|1|2|A|4428
8IE3|1|2|C|4429
8IE3|1|2|G|4430

Current chains

Chain 2

28S rRNA

Nearby chains

Chain R

Ribosome biogenesis protein NSA2 homolog