IL_8IE3_179

3D structure

PDB id

8IE3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State E

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GGAGUGGC*GC(OMG)CC

Length

13 nucleotides

Bulged bases

8IE3|1|2|G|2546

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8IE3|1|2|G|2541
8IE3|1|2|G|2542
8IE3|1|2|A|2543
8IE3|1|2|G|2544
8IE3|1|2|U|2545
8IE3|1|2|G|2546
8IE3|1|2|G|2547
8IE3|1|2|C|2548
*
8IE3|1|2|G|2771
8IE3|1|2|C|2772
8IE3|1|2|OMG|2773
8IE3|1|2|C|2774
8IE3|1|2|C|2775

Current chains

Chain 2

28S rRNA

Nearby chains

Chain 8

5.8S ribosomal RNA; 5.8S rRNA

Chain F

60S ribosomal protein L34

Chain O

60S ribosomal protein L38

Chain g

60S ribosomal protein L23a