IL_8IFB_077

3D structure

PDB id

8IFB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dibekacin-bound E.coli 70S ribosome in the PURE system

Experimental method

ELECTRON MICROSCOPY

Resolution

2.43 Å

Loop

Sequence

CCUGAAUC*GUGAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IFB_077 not in the Motif Atlas

Homologous match to IL_5J7L_253

Geometric discrepancy: 0.3703

The information below is about IL_5J7L_253

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_77870.1

Basepair signature

cWW-L-R-L-tHS-L-cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

8IFB|1|a|C|274
8IFB|1|a|C|275
8IFB|1|a|U|276
8IFB|1|a|G|277
8IFB|1|a|A|278
8IFB|1|a|A|279
8IFB|1|a|U|280
8IFB|1|a|C|281
*
8IFB|1|a|G|359
8IFB|1|a|U|360
8IFB|1|a|G|361
8IFB|1|a|A|362
8IFB|1|a|G|363

Current chains

Chain a

23S ribosomal RNA

Nearby chains