IL_8IFB_103

3D structure

PDB id

8IFB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dibekacin-bound E.coli 70S ribosome in the PURE system

Experimental method

ELECTRON MICROSCOPY

Resolution

2.43 Å

Loop

Sequence

GUC*GC

Length

5 nucleotides

Bulged bases

8IFB|1|a|U|1012

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IFB_103 not in the Motif Atlas

Homologous match to IL_4WF9_038

Geometric discrepancy: 0.0973

The information below is about IL_4WF9_038

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

147

Unit IDs

8IFB|1|a|G|1011
8IFB|1|a|U|1012
8IFB|1|a|C|1013
*
8IFB|1|a|G|1149
8IFB|1|a|C|1150

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain i

50S ribosomal protein L13

Chain p

50S ribosomal protein L20