IL_8IFB_170

3D structure

PDB id

8IFB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dibekacin-bound E.coli 70S ribosome in the PURE system

Experimental method

ELECTRON MICROSCOPY

Resolution

2.43 Å

Loop

Sequence

CUGAAG*CGUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IFB_170 not in the Motif Atlas

Homologous match to IL_5J7L_351

Geometric discrepancy: 0.086

The information below is about IL_5J7L_351

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_29471.1

Basepair signature

cWW-cWW-L-tHS-L-cWW

Number of instances in this motif group

1

Unit IDs

8IFB|1|a|C|2806
8IFB|1|a|U|2807
8IFB|1|a|G|2808
8IFB|1|a|A|2809
8IFB|1|a|A|2810
8IFB|1|a|G|2811
*
8IFB|1|a|C|2889
8IFB|1|a|G|2890
8IFB|1|a|U|2891
8IFB|1|a|G|2892

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain d

50S ribosomal protein L3

Chain r

50S ribosomal protein L22

Chain z

50S ribosomal protein L32