IL_8IFC_024

3D structure

PDB id

8IFC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Arbekacin-bound E.coli 70S ribosome in the PURE system

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IFC_024 not in the Motif Atlas

Homologous match to IL_5J7L_020

Geometric discrepancy: 0.1047

The information below is about IL_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

8IFC|1|A|U|409
8IFC|1|A|G|410
8IFC|1|A|A|411
8IFC|1|A|A|412
8IFC|1|A|G|413
8IFC|1|A|A|414
8IFC|1|A|A|415
8IFC|1|A|G|416
*
8IFC|1|A|U|427
8IFC|1|A|G|428
8IFC|1|A|U|429
8IFC|1|A|A|430
8IFC|1|A|A|431
8IFC|1|A|A|432
8IFC|1|A|G|433

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain D

30S ribosomal protein S4