IL_8IFC_101

3D structure

PDB id

8IFC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Arbekacin-bound E.coli 70S ribosome in the PURE system

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGG*UUAC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IFC_101 not in the Motif Atlas

Geometric match to IL_4V9F_097

Geometric discrepancy: 0.223

The information below is about IL_4V9F_097

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

8IFC|1|a|G|880
8IFC|1|a|G|881
8IFC|1|a|G|882
*
8IFC|1|a|U|894
8IFC|1|a|U|895
8IFC|1|a|A|896
8IFC|1|a|C|897

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain 5

Transfer RNA; tRNA